Rowe, Kevin C, Sonal Singhal, Matthew D Macmanes, Julien Ayroles, Toni Lyn Morelli, Emily M Rubidge, Ke Bi, and Craig C Moritz. (2011) 2011. “Museum Genomics: Low-Cost and High-Accuracy Genetic Data from Historical Specimens.”. Mol Ecol Resour 11 (6): 1082-92.

Stone, Eric A, and Julien Ayroles. (2009) 2009. “Modulated Modularity Clustering As an Exploratory Tool for Functional Genomic Inference.”. PLoS Genet 5 (5): e1000479.

Dejean, Alain, Pascal Jean Solano, Julien Ayroles, Bruno Corbara, and Jérôme Orivel. (2005) 2005. “Insect Behaviour: Arboreal Ants Build Traps to Capture Prey.”. Nature 434 (7036): 973.

Kocher, Sarah D, Julien Ayroles, Eric A Stone, and Christina M Grozinger. 2010. “Individual Variation in Pheromone Response Correlates With Reproductive Traits and Brain Gene Expression in Worker Honey Bees.”. PLoS One 5 (2): e9116.

Massouras, Andreas, Sebastian M Waszak, Monica Albarca-Aguilera, Korneel Hens, Wiebke Holcombe, Julien Ayroles, Emmanouil T Dermitzakis, et al. 2012. “Genomic Variation and Its Impact on Gene Expression in Drosophila Melanogaster.”. PLoS Genet 8 (11): e1003055.

Ayroles, Julien, Kimberly A Hughes, Kevin C Rowe, Melissa M Reedy, Sandra L Rodriguez-Zas, Jenny M Drnevich, Carla E Cáceres, and Ken N Paige. (2009) 2009. “A Genomewide Assessment of Inbreeding Depression: Gene Number, Function, and Mode of Action.”. Conserv Biol 23 (4): 920-30.

Mackay, Trudy F C, Eric A Stone, and Julien Ayroles. (2009) 2009. “The Genetics of Quantitative Traits: Challenges and Prospects.”. Nat Rev Genet 10 (8): 565-77.

Corbett-Detig, Russell B, Jun Zhou, Andrew Clark, Daniel L Hartl, and Julien Ayroles. (2013) 2013. “Genetic Incompatibilities Are Widespread Within Species.”. Nature 504 (7478): 135-7.

Ayroles, Julien, Brooke A Laflamme, Eric A Stone, Mariana F Wolfner, and Trudy F C Mackay. (2011) 2011. “Functional Genome Annotation of Drosophila Seminal Fluid Proteins Using Transcriptional Genetic Networks.”. Genet Res (Camb) 93 (6): 387-95.

Huang, Wen, Stephen Richards, Mary Anna Carbone, Dianhui Zhu, Robert Anholt, Julien Ayroles, Laura Duncan, et al. (2012) 2012. “Epistasis Dominates the Genetic Architecture of Drosophila Quantitative Traits.”. Proc Natl Acad Sci U S A 109 (39): 15553-9.

Ober, Ulrike, Julien Ayroles, Eric A Stone, Stephen Richards, Dianhui Zhu, Richard A Gibbs, Christian Stricker, et al. 2012. “Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila Melanogaster.”. PLoS Genet 8 (5): e1002685.

Mackay, Trudy F C, Stephen Richards, Eric A Stone, Antonio Barbadilla, Julien Ayroles, Dianhui Zhu, Sònia Casillas, et al. (2012) 2012. “The Drosophila Melanogaster Genetic Reference Panel.”. Nature 482 (7384): 173-8.

Edwards, Alexis C, Julien Ayroles, Eric A Stone, Mary Anna Carbone, Richard F Lyman, and Trudy F C Mackay. 2009. “A Transcriptional Network Associated With Natural Variation in Drosophila Aggressive Behavior.”. Genome Biol 10 (7): R76.

Harbison, Susan T, Mary Anna Carbone, Julien Ayroles, Eric A Stone, Richard F Lyman, and Trudy F C Mackay. (2009) 2009. “Co-Regulated Transcriptional Networks Contribute to Natural Genetic Variation in Drosophila Sleep.”. Nat Genet 41 (3): 371-5.

Ayroles, Julien, Mary Anna Carbone, Eric A Stone, Katherine W Jordan, Richard F Lyman, Michael M Magwire, Stephanie M Rollmann, et al. (2009) 2009. “Systems Genetics of Complex Traits in Drosophila Melanogaster.”. Nat Genet 41 (3): 299-307.

Ayroles, Julien, Sean M Buchanan, Chelsea O’Leary, Kyobi Skutt-Kakaria, Jennifer K Grenier, Andrew Clark, Daniel L Hartl, and Benjamin L de Bivort. (2015) 2015. “Behavioral Idiosyncrasy Reveals Genetic Control of Phenotypic Variability.”. Proc Natl Acad Sci U S A 112 (21): 6706-11.

Jumbo-Lucioni, Patricia, Julien Ayroles, Michelle Chambers, Katherine W Jordan, Jeff Leips, Trudy Fc Mackay, and Maria De Luca. 2010. “Systems Genetics Analysis of Body Weight and Energy Metabolism Traits in Drosophila Melanogaster.”. BMC Genomics 11: 297.

Ayroles, Julien, and Greg Gibson. 2006. “Analysis of Variance of Microarray Data.”. Methods Enzymol 411: 214-33.

Hughes, Kimberly A, Julien Ayroles, Melissa M Reedy, Jenny M Drnevich, Kevin C Rowe, Elizabeth A Ruedi, Carla E Cáceres, and Ken N Paige. (2006) 2006. “Segregating Variation in the Transcriptome: Cis Regulation and Additivity of Effects.”. Genetics 173 (3): 1347-55.

Morozova, Tatiana, V, Julien Ayroles, Katherine W Jordan, Laura Duncan, Mary Anna Carbone, Richard F Lyman, Eric A Stone, et al. (2009) 2009. “Alcohol Sensitivity in Drosophila: Translational Potential of Systems Genetics.”. Genetics 183 (2): 733-45, 1SI.

Carbone, Mary Anna, Julien Ayroles, Akihiko Yamamoto, Tatiana Morozova V, Steven A West, Michael M Magwire, Trudy F C Mackay, and Robert Anholt. 2009. “Overexpression of Myocilin in the Drosophila Eye Activates the Unfolded Protein Response: Implications for Glaucoma.”. PLoS One 4 (1): e4216.

Zwarts, Liesbeth, Lies Vanden Broeck, Elisa Cappuyns, Julien Ayroles, Michael M Magwire, Veerle Vulsteke, Jason Clements, Trudy F C Mackay, and Patrick Callaerts. (2015) 2015. “The Genetic Basis of Natural Variation in Mushroom Body Size in Drosophila Melanogaster.”. Nat Commun 6: 10115. doi:10.1038/ncomms10115.